Abecasis, G.R., W.O.C. Cookson, and L.R. Cardon. (2000). Pedigree tests of transmission disequilibrium. European Journal of Human Genetics 8: 545-551.Allison, D.B. (1997). Transmission-disequilibrium tests for quantitative traits. American Journal of Human Genetics 66: 279-292.Allison, D.B., M. Heo, et al. (1999). Sibling based tests of linkage and association for quantitative traits. American Journal of Human Genetics 64: 1754-1764.Benjamini, Y. and Y. Hochberg. (1995). Controlling the False Discovery Rate: A practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B 57: 289-300.Carlson, C.C., M.A. Eberle, et al. (2004). Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. American Journal of Human Genetics 74: 106-120.Chu, T.-M., B. Weir, et al . (2002). A systematic statistical linear modeling approach to oligonucleotide array experiments. Mathematical Biosciences 176: 35-51.Devlin, B. and Roeder, K. (1999). Genomic control for association studies. Biometrics 55: 997-1004.Dobbin, K. and R. Simon. (2002). Comparison of microarray designs for class comparison and class discovery. Bioinformatics 8(11): 1438-1445.Dudoit, S., Y. H. Yang, et al. (2002). Statistical methods for identifying genes with differential expression in replicate cDNA microarray experiments. Statistica Sinica 12: 111-140Haseman, J.K., and R.C. Elston. (1972). The investigation of linkage between a quantitative trait and a marker locus. Behavior Genetics 2: 3-19.Idaghdour, Y., W Czika, et al . (2010) Geographical genomics of human leukocyte gene expression variation in southern Morocco. Nature Genetics 42: 62-67.Jin, W., R. M. Riley, et al. (2001). The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nature Genetics 29: 389-395.Johnson, N.L, and S. Kotz. (1970). Continuous Univariate Distributions-1. John Wiley & Sons: 300 pp.Kent, W.J. et al. (2002) The Human Genome Browser at UCSC. Genome Res. 12: 996-1006.Kerr, M. K. and G. A. Churchill. (2001). Experimental design for gene expression microarrays. Biostatistics 2: 183-201.Kim, S.-Y. and D.J. Volsky. (2005) PAGE: Parametric Analysis of Gene Set Enrichment. BMC Bioinformatics . 6: 144.Kong, A., D.F. Gudbjartsson, et al. (2002). A high resolution recombination map of the human genome. Nature Genetics 31: 241–247.Kruglyak, L., M.J. Daly, M.P. Reeve-Daly, and E.S. Lander. (1996). Parametric and nonparametric linkage analysis: a unified multipoint approach. American Journal of Human Genetics 58: 1347-1363.Lathrop, G.M., Lalouel, J.M., and White, R.L. (1986). Construction of human linkage maps: likelihood calculations for multilocus analysis. Genet Epidemiol 3: 39-52.Li, B., and S.M. Leal. (2008). Novel methods for detecting associations with rare variants for common diseases: Application to analysis of sequence data. American Journal of Human Genetics 83: 311-21.Li, Y. and G.R. Abecasis. (2006). Mach 1.0: Rapid haplotype reconstruction and missing genotype inference. American Journal of Human Genetics S79: 2290.Maddison W.P., D.L. Swofford, and D.R. Maddison. (1997). Nexus: An extendable file format for systematic information. Syst. Biol. 46:590-621.Maniatis, N., A. Collins, et al. (2002). The first linkage disequilibrium (LD) maps: Delineation of hot and cold blocks by diplotype analysis. Proc. Natl. Acad. Sci. (USA) 99: 2228-2233.Merchant, M. and S. R. Weinberger. (2000). Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry. Electrophoresis 21: 1164-1177.Monks, S.A. and N.L. Kaplan. (2000). Removing the sampling restrictions from family-based tests of association for a quantitative-trait locus. American Journal of Human Genetics 66: 576-592.Price, A.L., N.J. Patterson, et al. (2006). Principal components analysis corrects for stratification in genome-wide association studies. Nature Genetics 38: 904-909.Purcell S, Neale B, Todd-Brown K, et al. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics 81(3): 559-75.Qu, Y., B.-L. Adam, et al. (2002). Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients. Clinical Chemistry 48: 1835-1843.Redon, R., et al. (2006). Global variation in copy number in the human genome. Nature 444: 444-454.Slager, S.L., and D.J. Schlaid. (2001). Case-control Studies of genetic markers: power and sample size approximations for Armitage's Test for Trend. Hum. Hered . 52: 149-153.Slifker, J.F., and S.S. Shapiro. (1980). The Johnson System: Selection and Parameter Estimation. Technometrics 22: 239-246.Smith, R., L.A. Owen, D.J. Trem, J.S. Wong, J.S. Whangbo, T.R. Golub, and S.L. Lessnick. (2006). Expression profiling of EWS/FLI identifies NKX2.2 as a critical target gene in Ewing’s sarcoma. Cancer Cell 9: 405-416.Tibshirani, R. (1996). Regression shrinkage and selection via the lasso. J. R. Statist. Soc . B 58: 267–288.Tuzun, E., A.J. Sharp, et al. (2005). Fine-scale structural variation of the human genome. Nature Genetics 37: 727-732.Wang S., C.J. Basten, and Z.-B. Zeng (2007). Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC. ( http://statgen.ncsu.edu/qtlcart/WQTLCart.htm ).Wang, T. and R.C. Elston. (2004). A modified revisited Haseman-Elston method to further improve power. Human Heredity 57: 109-116.Whittemore, A.S., and I-P. Tu. (1998). Simple, robust linkage tests for affected sibs. American Journal of Human Genetics 62: 1228-1242.Wiggington, J.E., D.J. Cutler, and G.R. Abecasis (2005). A note on exact tests of Hardy-Weinberg equilibrium. American Journal of Human Genetics 76: 887-893.Varambally, S., J. Yu, et al. (2005). Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression. Cancer Cell 8: 393-406.Zang, W., A. Collins, et al. (2002). Properties of linkage Disequilibrium (LD) maps. Proc. Natl. Acad. Sci. (USA) 99: 17004-17007.Zaykin, D.V., P.H. Westfall, et al. (2002). Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals. Human Heredity 53: 79-91.Zhang, Z., E. Erzoz, et al. (2010). Mixed linear model approach adapted for genome-wide association studies. Nature Genetics 42: 355-360.Zhao, K., M.J. Aranzana, et al. (2007). An Arabidopsis example of association mapping in structured samples. PLOS Genetics 3: 71-82.