Affymetrix Tiling CEL Input Engine

Running this process for the NCBI GEO GSE15220 data set generates the Results window shown below. Refer to the Affymetrix Tiling CEL Input Engine process description for more information.

The Results window contains the following elements:

Output Data

This process generates the following data sets:

•	Experimental Design Data Set (EDDS): This data set lists specific information about experimental details for each of the arrays. Refer to Experimental Design Data Set (EDDS) for more information about this data set.

•

Output Data Set: This data set contains the data from the different .cel files. This data set is in the tall format: the intensity data from each array are listed in a separate column while individual spots are listed in rows. Control Probe Data Set: This data set lists data that is generated using the control l probes.

Note: You can view the data in a file or data set by clicking either Open or View Subset (when the data set is very large).

Launch Follow-up Processes

•	Basic Tiling Workflow: Click Basic Tiling Workflow to launch the Basic Tiling Workflow process with the output data set and the EDDS specified as input.

•	Bin Intensities or Read Counts: Click Bin Intensities or Read Counts to launch the Bin Intensities or Read Counts process with the output data set specified as input.

•	Track Gene Text: Click Track Gene Text to launch the Track Gene Text process.

•	Gene Model Summary: Click Gene Model Summary to launch the Gene Model Summary process with the output data set specified as input.

General

•	Click Reopen Dialog to reopen the completed process dialog used to generate this output.

•	Click Close All to close all graphics windows and underlying data sets associated with the output.