Haplotype Estimation Method

Use this parameter to select the method of haplotype estimation.

Available methods are described in the table below:

Select:	Description:
EST	Uses maximum likelihood estimate of the haplotype frequency to calculate the LD test statistic and LD measures. This method is selected by default.
NONE	Uses the composite linkage disequilibrium in calculations for estimating haplotype frequencies, with test statistics and LD measures assuming Hardy-Weinberg equilibrium
NONEHWD	Uses the composite linkage disequilibrium in calculations for estimating haplotype frequencies, with test statistics and LD measures adjusting for Hardy-Weinberg disequilibrium.
GIVEN	Assumes that the haplotypes are known and are designated by the order of the alleles. and so the observed haplotype frequencies are used.

To Specify an Estimation Method:

Make a selection using the drop-down menu.