Rare Variant Recoding

This feature enables you to specify how rare variants are coded in the output data set.

 

Select:	When:
Use Dominant Coding for individual rare variants	To convert rare variant genotypes to the value 1 if the genotype comprises one or more rare alleles and 0 otherwise.
Use Dominant Coding collapsing across rare variants in a group	To combine rare variants within an analysis group (such as gene) and coding as 1 if any rare alleles are present and 0 otherwise.
Use Genotype Recoding selected above	To use the same genotype recoding that is used for non-rare variants.

To Specify the Recoding Format:

Select the desired format by clicking within the appropriate radio button.