Use this option to specify a LOD score value to use for further breaking groups.
If the LOD score between two ordered markers in a linkage group is less than this threshold, the group will be broken into two groups between those markers.
Note: One linkage group can be broken into multiple (>=2) linkage groups.
A marker with LOD score lesser than the specified value with both flanking markers will be put into a singleton group and dropped out of the analysis. Once a group of has been broken into multiple linkage groups, each new group will be re-run through the ordering process.
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Check the Break linkage groups between markers with large ordered distances box to activate this field.
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Make sure that LOD Score has been specified as the selection criterion in the Break linkage groups based on: option.
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