Single-Locus Genotype Tests Pearson chi-square and Fisher’s exact

Check this box to perform single- locus genotype tests of association with any binary traits selected on each SNP (or collapsed rare variant locus), both the Pearson chi-square and Fisher’s exact test. When rare variants have been collapsed within a group, this is equivalent to the CAST method.

To Perform Single-Locus Genotype Tests:

Ensure that the box is checked.