Haplotype Analysis

Click on a button corresponding to a haplotype analysis process. Refer to the table below for guidance.

Process	Choose this process for...
Haplotype Estimation	Estimating unobserved haplotype frequencies using an expectation-maximization (EM) algorithm
Haplotype Trend Regression	Testing association of each haplotype with a quantitative, binary, count, or survival trait
Haplotype Q-K Mixed Model	Testing for association of each haplotype with traits, while simultaneously controlling for family relatedness (K matrix) and population structure (Q matrix).
htSNP Selection	Identifying subsets of haplotype tag SNPs (htSNPs) -- markers that can be used to partially explain haplotype diversity

See Genetics for other subcategories.