Other Genetics

The first three processes import a set of files created by a SNP imputation program, and output two or three SAS genotype data sets that can be used in subsequent analyses. View their individual descriptions for additional information.

Process	Input file format	Example SNP imputation programs used to create input file
Imputed SNP (Tall Format) Input Engine	Tall	IMPUTE, BEAGLE
Imputed SNP (Wide Format) Input Engine	Wide	MACH
Imputed SNP Import Tutorial	Tall or Wide	IMPUTE, BEAGLE, MACH

The remaining processes import genetic marker data sets in various formats to produce one or more SAS data sets.

Process	Extension of raw input files
Arlequin Input Engine	.arl
NEXUS Input Engine	.nex
Pedigree Input Engine	varies (refer to LINKAGE, QTDT, GeneHunter, or FBAT documentation)
PLINK Input Engine	.ped and .map
PLINK Binary Input Engine	.bed, .bim, and .fam
WinQTLCart Input Engine	.mcd
OneMap Input Engine	.txt
Tassel-GBS Import Engine	.sas7bdat

See Import for other subcategories.