Basic

Click on a button corresponding to a basic workflow1. Explore the links in the table below to learn more about each of the workflows available to you.

Note: The individual processes (and order) used per workflow varies based on the parameters specified. The table below lists all of the processes that can be run as part of each workflow

Process	Basic Genetics Workflow	Basic Linkage Mapping Workflow	Basic Copy Number Workflow	Basic Exon/Alternative Splicing Workflow	Basic Expression Workflow	Basic miRNA/miRNA-Seq Workflow	Basic RNA-Seq Workflow	Basic Tiling Workflow
1	Subset and Reorder Genetic Data	Recombination and Linkage Groups	Distribution Analysis	Distribution Analysis	Distribution Analysis	Distribution Analysis	Distribution Analysis	Distribution Analysis
2	Marker Properties	Linkage Map Order	Correlation and Principal Variance Component Analysis	Correlation and Principal Variance Component Analysis	Correlation and Principal Variance Component Analysis	Correlation and Principal Variance Component Analysis	Correlation and Principal Variance Component Analysis	Correlation and Principal Variance Component Analysis
3	Missing Genotype by Trait Summary	Linkage Map Viewer	Data Standardize	Correlation and Grouped Scatterplots	Correlation and Grouped Scatterplots	Correlation and Grouped Scatterplots	Correlation and Grouped Scatterplots	Data Standardize
4	Subset and Reorder Genetic Data	Subset and Reorder Genetic Data	Distribution Analysis	Data Standardize	Data Standardize	Data Standardize	TMM Normalization	Distribution Analysis
5	Case-Control Association		Correlation and Principal Variance Component Analysis	Distribution Analysis	Distribution Analysis	Distribution Analysis	Transform	Correlation and Principal Variance Component Analysis
6			One-Way ANOVA	Correlation and Principal Variance Component Analysis	Correlation and Principal Variance Component Analysis	Correlation and Principal Variance Component Analysis	Distribution Analysis
7				Correlation and Grouped Scatterplots	Correlation and Grouped Scatterplots	Correlation and Grouped Scatterplots	Correlation and Principal Variance Component Analysis
8				ANOVA	ANOVA	One-Way ANOVA	Correlation and Grouped Scatterplots
9							ANOVA

Tip: For more advanced workflows, creating custom workflows (Workflow Builder), and compiling results from previously run processes (Journal Builder), see Advanced workflows.

See Workflows for other subcategories.

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1

The Basic Single Cell RNA-Seq Workflow is not listed in this table because it primarily uses native JMP processes. The only JMP Genomics-specific AP used in this workflow is Variable Gene Selection.