Advanced

Click on a button corresponding to an advanced workflow. Explore the links in the table below to learn more about each of the workflows available to you.

Note: The individual processes (and order) used per workflow varies based on the parameters specified. The table below lists all of the processes that can be run as part of each workflow.

Process	Genetics Rare Variants Workflow	Genetics Q-K Analysis Workflow	Expression QC Workflow	Expression Statistics Workflow
1	Marker Properties	Recode Genotypes or Expand Multiallelic Genotypes1	Distribution Analysis	ANOVA
2	Recode Genotypes	PCA for Population Stratification	Correlation and Principal Variance Component Analysis	Hierarchical Clustering
3	SNP-Trait Association	Relationship Matrix	Correlation and Grouped Scatterplots	K-Means Clustering
4	Multiple SNP-Trait Association	K Matrix Compression	Data Standardize	Principal Components Analysis
5		Q-K Mixed Model or Marker-Trait Association1	Distribution Analysis
6			Correlation and Principal Variance Component Analysis
7			Correlation and Grouped Scatterplots

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1

The latter process is used instead of the former process when performing multiallelic analyses on multiallelic markers.

Workflow and Review Builders

If your analysis needs do not match the workflows provided, or you want to compile results in a journal, two additional processes are available:

Process	Choose this process for...
Workflow Builder	Building your own workflow
Journal Builder	Compiling previously run processes into a journal

See Workflows for other subcategories.