Results (IM/CIM Analysis)

Tabs

Tab Viewer

This pane provides you with a space to view individual tabs within the Results window. Use the tabs to access and view the output plots and associated data sets.

The following tabs are generated by this process:

•	Results (IM and CIM Analysis): This tab includes plots for each chromosome (with traits either overlaid in a single plot or split out into separate plots) displaying the LOD score versus the QTL testing location in centiMorgans or Morgans.

•	Estimate Plots (IM and CIM Analysis): These plots show the LOD score versus the Additive Effect computed by the QTL model for each trait.

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R2 Plots: This tab includes distributions displaying R2 estimates (also called CorrCoeff2, the square of the correlation coefficient) for each QTL testing location for a trait, and, a multivariate correlation plot showing the correlations between the trait estimates. Note: The correlation scatterplot is generated only when multiple Trait Variables are specified.

•	SAS Output: This tab displays results tables created by SAS for the QTL model. Note: This tab is generated only when EM Algorithm is chosen as the QTL Mapping Model Algorithm.

General

•	Click View Data to reveal the underlying data table associated with the current tab.

•	Click Reopen Dialog to reopen the completed process dialog used to generate this output.

•	Click Create Report to generate a pdf- or rtf-formatted report containing the plots and charts of selected tabs.

•	Click Close All to close all graphics windows and underlying data sets associated with the output.