Create data set with numerically coded genotypes

Select this option to create a SAS data set containing numerically recoded genotypes and all other non-marker variables from the input data set.

This option should be selected when you are not creating a Cell Plot but need numeric genotypes for subsequent processes, such as PCA for Population Stratification or the Predictive Modeling processes.

By default, the name of the output data set is the name of the input data set with the suffix _numgeno appended.

For detailed information about the files and data sets used or created by JMP Genomics software, see Files and Data Sets.

To Select This Option:

8

Click within the check box.