Frequency Variable

Use this field to specify the variable in the haplotype frequency data set that contains the haplotype frequencies. In most cases, this is the Freq column.

To Specify the Frequency Variable:

8

Specify the Haplotype Frequency Data Set.

All of the variables in the specified data set are displayed in the Available Variables field.

8

Examine the list of available variables.

8

Highlight the variable containing the haplotype frequencies.

8

Click to add the highlighted variable to the Frequency Variable field, as shown below:

Note: If you ran Haplotype Estimation with the Test allelic association for LD option selected, then there will be two columns containing haplotype frequencies: H0Freq (under the null hypothesis of no LD) and H1Freq that contains the frequencies using the selected estimation method. Either one of these columns can be selected as the frequency variable.