Use QTL data numeric coding from JMP Genomics versions prior to 5.1
Check this box for data format compatibility with JMP Genomics versions prior to Version 5.1.
Note: This option becomes active only if Numeric Genotypes is chosen as the Format of Marker Variables.
The old and new formats for representing potential genotypes are described in the table below:
Genotype |
Numerical Designation in Previous Versions of JMP Genomics |
Numerical Designation in Current Version of JMP Genomics |
AA (MM) |
2 |
0 |
AB (Mm) |
1 |
1 |
BB (mm) |
0 |
2 |
not BB (M-) |
-3 |
3 |
not AA (m-) |
-2 |
4 |
missing |
-1 |
. |
If your data are coded using the old numeric format, they will be converted to the new format.
WARNING: Check this box only if your data are coded in the old format. If your data are already coded numerically with values 0 to 4, this option could produce unexpected results.