Output Expected Genotype Data Set

Use this field to specify a name for the SAS data set containing one column per SNP with the expected numeric genotype, where the genotype 2 represents homozygous for the minor allele, which is determined using the genotype probabilities.

This data set can be used as the input to SNP-Trait Association with Format of Marker Variables set to Numeric Genotypes and only the Trend test selected to be performed.

If no name is specified, the name of the first genotype file, with the suffix _ige appended, is used.

For detailed information about the files and data sets used or created by JMP Genomics software, see Files and Data Sets.

To Specify an Output Genotype Probabilities Data Set:

8

Type the name of the data set into the text field.

8

If you change your mind and would like to reset the field, click Clear.