Control Levels for Differential Expression Comparisons

Specify the levels to be used as a control for the Select Comparison Set for Differential Expression Tests. Enclose each level in double quotation marks (“”). Separate multiple levels with spaces ( ).

Note: This option is available only if Differences with a Control is selected as the Select Comparison Set for Differential Expression Tests.

Note: If you leave this field blank, the first level for each effect is used as the control.

Observe the following rules when entering the Control Levels:

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Include each level in double quotation marks (“”).

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Separate the levels with spaces ( ).

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If you have more than one Fixed effect, separate the list of levels for each effect by commas (,).

To Specify Control Levels:

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Enter the values into the Control Levels for Differential Expression text field.