Running this process for the subset of the Affymetrix
X titration
example generates the
Results
window shown below. Refer to the
Affymetrix Copy Number CHP Input Engine
process description for more information.
The
Results
window contains the following elements:
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Experimental Design Data Set (EDDS)
: This data set lists specific information about experimental details for each of the arrays. Refer to
Experimental Design Data Set (EDDS)
for more information about this data set.
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Intensity Data Set:
(Also know as the
Copy Number Data Set
or the
Output Data Set
). This data set contains the data from the different
.chp
files. This data set is typically very large; so large, in fact, that opening it can severely tax the memory of most desktop computers and servers. Clicking
opens and runs the
Check Data Contents
process for the output data. This is a useful and quick method for viewing a subset of an extremely large data set, allowing you to verify that the data were imported correctly.
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CHP Header Data Set
: This data set contains all the parameters in the header portion of each .
chp
file. These parameters include the algorithm applied, the type of chip used, the program applied, and other quality control information among the control l
probes
. The parameters are listed in columns, while the individual
.chp
files are listed in rows.
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Experimental Design Data Set (EDDS) for Output Data with additional measurements
: This EDDS is generated when additional measurements to include are specified using the
Measures to Include (SNP6 Array)
,
CN Measurements to Include (100K or 500K Arrays)
, or
LOH Measurements to Include (100K or 500K Arrays)
parameters.
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Intensity Data Set
with additional measurements
:
This data set contains the data from the different
.chp
files along with the additional measurements to include are specified using the
Measures to Include (SNP6 Array)
,
CN Measurements to Include (100K or 500K Arrays)
, or
LOH Measurements to Include (100K or 500K Arrays)
parameters. It is to be paired with the
Experimental Design Data Set (EDDS) for Output Data with additional measurements
. This data set is typically very large; so large, in fact, that opening it can severely tax the memory of most desktop computers and servers. Clicking
opens and runs the
Check Data Contents
process for the output data. This is a useful and quick method for viewing a subset of an extremely large data set, allowing you to verify that the data were imported correctly.
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Note
: You can view the data in a file or data set by clicking either
or
(when the data set is very large).
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Basic Copy Number Workflow
: Click
to launch the
Basic Copy Number Workflow
process with the output data set, EDDS, and
annotation data set
specified as input.
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Click
to reopen the completed process dialog used to generate this output.
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Click
to close all graphics windows and underlying data sets associated with the output.
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