Processes | Genetics | Shuffling LOD Threshold

Shuffling LOD Threshold
Use the text box to indicate the Shuffling LOD Threshold for accepting the new order of markers instead of the original order.
A new marker order is accepted if its LOD value is larger than the Shuffling LOD Threshold and its Sum of Adjacent Recombination Fraction (SARF) is smaller than that of the original order. Smaller Shuffling LOD Threshold values might lead to more changes in the original marker order.
Note : This option is enabled only when the Shuffle Markers check box is checked.
To Specify the Shuffling LOD Threshold:
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Enter the desired LOD threshold in the text box.