The
Track Color Map
process uses a SAS data set as input to create a settings (
.sas
) file that defines a track consisting of a heat map of one or more quantitative
variables
. This
settings file
can then be selected as a
track file
for embellishing various graphics plotted along a
genome
.
A single SAS data set, which contains
color map variables, is
required
. The data must already be
binned
and its
Y Variables
must be specified in the
dialog
.
The
huex_1_mn_trimmed_bew_iqr_amr.sas7bdat
data set represents a subset of an IQR-normalized SAS data set (generated
from the Affymetrix human
exon
data available in the JMP Genomics
Sample Data\Copy Number
folder,
using the
Basic Exon/Alternative Splicing Workflow
), and serves as an example. It is partially shown below.
A
n additional data set
, the
Annotation Data Set
, is
optional
unless the input data set does not contain the relevant annotation information. This data set contains information such as gene identity or chromosomal location, for each of the markers.
For detailed information about the files and data sets used or created by JMP Life Sciences software, see
Files and Data Sets
.
Running the
Track Bar Chart
process results in the generation of the
TrackBarChart_-log10p Tissue by Probeset.sas
settings file, whose path is displayed in a
JMP Genomics Message
window.
