The
Chromosome Position Plots
tab is shown below:
Note
: This tab is generated when a
Chromosome Variable
is specified.
The
Chromosome Position Plots
tab contains the following elements:
|
•
|
A series of
p
-Value Plots.
|
There is a separate plot for each set of differences on the selected
chromosome
. The
Y
-axis plots
p-values
: raw
p
-values are plotted on the left,
p
-values converted to the
-log
or
-log
10
scale on the right. The
X
-axis plots location of the marker according to the
Position Variable
.
Horizontal reference lines, one for the
p
-values and one for the
-log
10
p
-values, are drawn as dashed lines at the significance level that was specified. For
-log
or
-log
10
-converted
p
-values,
observations
above this line are significant; for
p
-values on the original scale, markers below the line are significant.
On this plot or any of the other
p
-value plots, simply mouse-over any of the points on the plot to see the name of the marker. When an annotation accession
variable
is specified when running the process, you can select a point and click on any of the Annotation action buttons to link directly to the corresponding website to view extensive annotation information about the marker.