List Enrichment

This process compares a set of curated lists (containing genes, proteins, or metabolites, for example) against a table of significance values, and then tests for significant enrichment using Fisher's exact test for association . Running this process for the AffymetrixLatinSquare sample setting generates the summary report shown below. Refer to the List Enrichment process description for more information.

In this example, the report shows that three out of six protein kinase genes and one out of three interleukin receptor genes show significant difference between the experiment and the control.