Running this process for the
XTitrationExample
sample setting generates the tabbed
Results
window shown below. Refer to the
Partition
process description for more information. Output from the process is organized into tabs. Each tab contains one or more plots, data panels, data filters, and so on. that facilitate your analysis.
The
Results
window contains the following panes:
This pane provides you with a space to view individual tabs within the
Results
window. Use the tabs to access and view the output plots and associated data sets.
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Chromosome Segmentation Summary
: displays the fitted partition results separately for each
chromosome
using a color theme to indicate value.
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Chromosome Segmentation Plots
: displays detailed plots of regions on which you drill down.
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View Chromosome Segmentation Details
: Specify minimum and maximum densities and click
to explore regions of interest in more detail.
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Original Rules Data Set:
This data set contains the split points for each sample as well as overall cutpoints and worth statistics for each chromosome. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_rules
. Click
to view the data set.
Original Summary Statistics Data Set:
This data set contains the start, end,
mean
,
standard deviation
, and N statistics for each segment, as well as overall statistics for each chromosome. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_sumstats
. Click
to view the data set.
Original Rules Data Set:
This data set is derived from the Original Rules data set by applying cutoff filters. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_filter_rules
. Click
to view the data set.
Filtered Summary Statistics Data Set:
This data set is derived from the Original Summary Statistics data set by applying cutoff filters. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_filter_sumstats
.Click
to view the data set.
Filtered Tall Detail Data Set:
This data set expands and repeats the data from the Filtered Summary Statistics data set into a tall data set, with one row per chromosome and position and rows aligned across samples. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_filter_tall
. Click
to view the data set.
Filtered Stacked Detail Data Set:
This data set stacks all of the data from the Filtered Tall Detail data set so that there is only one row per sample, chromosome, and position. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_filter_stacked
. Click
to view the data set.
Filtered Lite Summary Statistics Data Set:
This data set summarizes the Filtered Stacked Detail data into much fewer rows for display purposes. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_filter_lite
. Click
to view the data set.
Metadata Data Set:
This data set contains distinct values for chromosomes, samples, and the numeric values for the current positive and negative cutoffs. The name of this data is set is given by the
Output Prefix
, or input data set name if none given, with the suffix
_metadata
. Click
to view the data set.
For detailed information about the files and data sets used or created by JMP Life Sciences software, see
Files and Data Sets
.
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Click
to reveal the underlying data table associated with the current tab.
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Click
to reopen the completed process dialog used to generate this output.
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Click
to generate a
pdf
- or
rtf
-formatted report containing the plots and charts of selected tabs.
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Click
to close all graphics windows and underlying data sets associated with the output.
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