TPM Normalization

Running this process for the bam10_ctdata.sas7bdat data set generates the tabbed Results window shown below. Refer to the TPM Normalization process description for more information. Output from the process is organized into tabs. Each tab contains one or more plots, data panels, data filters, and so on, that facilitate your analysis.

The Results window contains the following panes:

Tab Viewer

This pane provides you with a space to view individual tabs within the Results window. Use the tabs to access and view the output plots and associated data sets.

The following tabs are generated by this process:

•	TMM Factors : This tab displays a three bar charts showing the scaling factors, total mapped reads per kilobase, and the total mapped reads for each sample.

Output Data Sets

•	Output Normalized Data Set : This data set (identified by the appended _tpm suffix) contains the normalized data in place of the values listed in the input data set. This data set can be used as input for a wide variety of analytical processes.

•	Output Log -Transformed Normalized Data Set : This data set (identified by the appended _tpl suffix) contains the log -transformed normalized data in place of the values listed in the input data set. This data set can be used as input for a wide variety of analytical processes.

Note : You should visually evaluate the results of this process using the Distribution Analysis process before using the normalized data in subsequent analyses.

General

•	Click View Data to surface the data sets corresponding to the active tab.

•	Click Reopen Dialog to reopen the completed process dialog used to generate this output.

•	Click Create Report to generate a pdf - or rtf -formatted report containing the plots and charts of selected tabs.

•	Click Close All to close all graphics windows and underlying data sets associated with the output.