Use this option to specify a value between
0
and
1
that represents how close the marker order solution should be to the optimal order before the algorithm finishes.
For example, if you specify a value of
0.05
, the algorithm will finish when the computed marker order solution is within 5% of the optimal solution (based on minimizing the total genetic map distance for each
linkage
group). This value is an
upper bound
; often, the solution will still be much closer (if not equal) to the optimal solution.
Note
: This stopping rule is used in conjunction with
Maximum Time per Algorithm Iteration (in minutes)
. If a near optimal solution is
not
solved within the maximum time allotted, the algorithm might not return a solution within the specified value of optimality.
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