Use this field to specify a recombination fraction (
rf
) for the analysis.
If
Order Algorithm
is NOT set to
Automated
, then the
LOD
value entered here is used to set the recombination fraction (
rf
) to half (
rf
=0.5) for any pair of markers for which the
LOD
value from the test of
linkage
is less than this value.
If
Order Algorithm
is set to
Automated
, then the value of
LOD
entered here is used when positioning markers in the linkage group.
Note
: When the best
LOD
for positioning a marker within a linkage group is less than the value specified here, this marker is dropped from the linkage group.
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Make sure that the
Order Algorithm
parameter is specified as desired.
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Enter the desired
LOD
threshold value into the text field.
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