Check this box to perform association tests (
Genotype
and/or
Trend
) on each non-selected marker from the
Input SAS Data Set
conditional on the selected model.
One at the time, each marker in the Input Data Set plus all markers in the selected model are fitted using SAS PROC MIXED. The
p
-value from genotype and/or trend test of each extra marker entering the selected model is computed and subsequently used to create a Manhattan plot.
This option is not available unless both the
Multi-Marker Model Selection
and the
Perform association tests on selected markers
check boxes are checked.
