Measures to Include (CopyNumber Data)

Select columns to include in the Output Data Set .

Choices include:

Measure	Description
Log2Ratio	Log 2 ratio (signal / median of reference signal)
WeightedLog2Ratio	Running median of log 2 ratios for n markers (default: n =5)
SmoothSignal	Each value is the result of a kernel smoothed over a window of genomically contiguous log 2 ratios. By default, this is converted to a copy number value using a log-linear model that fits each CN state to its expected log 2 ratio. This is useful for seeing mosaics.

For more information about these measures, refer to Affymetrix documentation .

For detailed information about the files and data sets used or created by JMP Life Sciences software, see Files and Data Sets .

To Select Measures to Include for Copy Number Data:

Left-click a single measure, or hold down Ctrl while left-clicking to select multiple measures.