The
All P-Value Plots
tab is shown below.
Note
: This tab is named
P-Value Plot
when either when no
Annotation Group Variable
is specified or when there is only one annotation group.
This tab displays the
p-value
overlay plots
from all the annotation groups in a single display.
P-values
(raw or transformed) are plotted on the
y
-axis and location is plotted on the
x
-axis. The horizontal red-dotted line represents the specified significance level.
If no annotation group
variable
is used or there is only one annotation group, this plot displays a single
p
-value plot (or multiple plots if any
BY variables
are selected) from the analysis.
Note
: For the
Haplotype Estimation
process, there is a point for each marker window instead of for each marker.
See
Overlay Plot
for more information.