The
Results
tab contains the following elements:
|
•
|
One or more
P
-Value Distributions.
|
This tab displays a
distributions
, along with the
quantiles
, of the
p-values
for each interaction pair tested, on the
-log
or
-log
10
scale if a
Conversion for p-Values
was selected. A separate distribution is generated for each
association
test performed.
A vertical red reference line is drawn at the significance cutoff. For the
-log
or
-log
10
scale, points to the right of the reference line are significant, for non-converted
p
-values, points to the left are significant.
Use the
Data Filter
to the right when one or more
Interaction Block Variables
have been used to subset the pairs that are displayed in the distribution(s). For example, click
for
chr_1
(circled below) to highlight those pairs with the first
SNP
on
chromosome
20, as shown below:
for
chr_1
(circled below) to highlight those pairs with the first
SNP
on
chromosome
20, as shown below:
You can drill-down to see more information about a pair of SNPs, a pair with a highly significant interaction
p
-value. For example, select one or more pairs (circled in the figure above) and click
. An example of the plots created by this is shown below. The value of the
Trait Variable
is displayed on the
y
-axis with
genotypes
at the two SNPs on the
x
-axis so you can view how distributions are different among the different genotypes. Annotation information is also displayed above the plot along with the
p
-values from the test(s) and, if an annotation accession
variable
was selected, buttons to view web pages for the SNP pair.
. An example of the plots created by this is shown below. The value of the
Trait Variable
is displayed on the
y
-axis with
genotypes
at the two SNPs on the
x
-axis so you can view how distributions are different among the different genotypes. Annotation information is also displayed above the plot along with the
p
-values from the test(s) and, if an annotation accession
variable
was selected, buttons to view web pages for the SNP pair.
