Index of /support/downloads/JMPG82_documentation/images

• Parent Directory
• 1521a99hpp_av06_cel.png
• 20_ipa_observations.png
• 2D_Bin.png
• 2D_Detrend.png
• 2D_Peak_Find.png
• 2D_Plot.png
• 2dBin_1.png
• 2dBin_2.png
• 2dDetrend_1.png
• 2dPeakfind_1.png
• 2dPeakfind_1_2.png
• 2dPlot_1.png
• 2dPlot_1_2.png
• 2dPlot_2.png
• 2dPlot_3a.png
• 2dPlot_3b.png
• 2d_bin_input_ds.png
• 3D_Align.png
• 3D_Plot.png
• 3dAlign_1.png
• 3dAlign_3.png
• 3dPlot_1.png
• 3dPlot_1_2.png
• 3dPlot_2.png
• 3dPlot_2_2.png
• 3d_allign_input_ds.png
• 3d_plot_input_ds.png
• 3d_scatterplot.png
• AB_Change_significance_criterion.png
• AB_tabulate.png
• AB_tabulate2.png
• ANOVA.png
• ANOVA1_2.png
• ANOVA2_3.png
• ANOVA3_4.png
• ANOVA4.png
• ANOVA5.png
• ANOVA6.png
• ANOVA_Normalization.png
• ARRFileParser_1.png
• ARRFileParser_2.png
• ASM_files_prior_to_v2.png
• AUC_tab_Plot_and_compare_ROC_curves_of_selected_methods_CVMC.png
• AddFilter.gif
• AddMarkersDroppedOutFromMarkerReduction.png
• Add_SAS_Server_Profile.png
• Add_Study.png
• Addins.png
• AffectedSib-PairTests_1.png
• Affected_Sib-Pair_Tests.png
• AffyAnnoCSVFiles_1.png
• AffyAnnoCSVFiles_1_2.png
• AffyCNAT.png
• AffyCNAT_input_cnt_file.png
• AffyCNAT_input_files.png
• AffyCNCHP.png
• AffyCNCHP_input_EDF.png
• AffyCytoCHPIE.png
• AffyCytoCelIE.png
• AffyCytogeneticsCEL_inputFiles.png
• AffyCytogeneticsCEL_input_annotation_data_set.png
• AffyCytogeneticsCEL_input_edf.png
• AffyCytogeneticsCHP_input_edf.png
• AffyCytogeneticsCHP_raw_files.png
• AffyExonCHPIE.png
• AffyExonWholeTxtIE_1.png
• AffyExpressionCEL_DesignTable_txt.png
• AffyExpressionCHP.png
• AffyExpressionCHP_subset_files.png
• AffyExpressionIE_1.png
• AffyIGB_1.png
• AffyIGB_input_data_set.png
• AffyIGB_input_data_set_2.png
• AffyLatinSquare_Design.png
• AffyLatinSquare_Design_emptyColumnName.png
• AffySNPCEL_input_EDF.png
• AffySNPCHP.png
• AffySNPCHP_chp_files_subset.png
• AffySNPCHP_input_edf.png
• AffySNPCelIE.png
• AffyTilingBAR.png
• AffyTilingBAR_2.png
• AffyTilingBAR_input_edf.png
• AffyTilingCEL_input_EDF.png
• AffyTilingIE.png
• AffymiRNACelIE_1.png
• Agilent.png
• Agilent_input_data_file.png
• Agilent_input_edf.png
• AlleleSpecificExpressionFilter_1.png
• AlleleSpecificExpressionFilter_2.png
• Allele_Specific_Expression_Filter.png
• AnovaNormalization_1.png
• Append.png
• AppendMarkersDroppedOutFromMarkerReductionAnalysis.png
• Append_1.png
• Append_2.png
• ApplyAdaptiveWeights.png
• ApplyAdaptiveWeights_2.png
• Arlequin.png
• ArrayTrackIE.png
• ArrayTrackIE_1.png
• ArrayTrackIE_AboutToRun.png
• ArrayTrackIE_BrowseforFilesorFolders.png
• ArrayTrackIE_ChooseEDF.png
• ArrayTrackIE_EDF_chosen.png
• ArrayTrackIE_EDF_chosen_FCRDF_choose_circled.png
• ArrayTrackIE_OpenWindow.png
• ArrayTrackIE_Results.png
• ArrayTrackIE_SASRunningProcesses.png
• ArrayTrack_input_data_file.png
• ArrayTrack_input_edf.png
• ArrowDown.gif
• ArrowUp.gif
• AssignWideVarRoles_1.png
• AssignWideVarRoles_2.png
• AssignWideVariableRoles.png
• AsymetricLossEvaluationProportion.png
• AsymetricLossFittingProportion.png
• AsymetricLossFittingProportion_2.png
• Available_Data_Sets_TSMC.png
• Available_Settings_CVMC.png
• Available_Settings_LCMC.png
• Available_Settings_TSMC.png
• AveragePoolSize.png
• AveragePoolSize_2.png
• BAM.png
• BAM_input_EDF.png
• BackcrossParentalLinesVariable.png
• BaseInputSASDateSet.png
• BaselineRefnDataIsLogTransformed.png
• BasicCopyNumberWorkflow_input_data_set.png
• BasicCopyNumberWorkflow_input_edds.png
• BasicCopyNumberWorkflow_output_journal.png
• BasicCopyNumberWorkflow_output_workflow_builder.png
• BasicExonAltSplicingWorkflow_input_EDDS.png
• BasicExonAltSplicingWorkflow_input_annotation_data_set.png
• BasicExonAltSplicingWorkflow_input_data_set.png
• BasicExonAltSplicingWorkflow_input_transcript_anno_data_set.png
• BasicExonAltSplicingWorkflow_output_journal.png
• BasicExonAltSplicingWorkflow_workflow_builder_window.png
• BasicExpressionWorkflow_input_EDDS.png
• BasicExpressionWorkflow_input_annotation_data_set.png
• BasicExpressionWorkflow_input_data_set.png
• BasicExpressionWorkflow_output_journal.png
• BasicExpressionWorkflow_output_workflow_builder.png
• BasicGeneticsWorkflow_input_annotation_data_set.png
• BasicGeneticsWorkflow_input_data_set.png
• BasicGeneticsWorkflow_output_journal.png
• BasicGeneticsWorkflow_workflow_builder_dialog.png
• BasicLinkageMappingWorkflow_anno_sas_data_set.png
• BasicLinkageMappingWorkflow_framework_map_data_set.png
• BasicLinkageMappingWorkflow_input_genotype_sas_data_set.png
• BasicLinkageMappingWorkflow_output_journal.png
• BasicLinkageMappingWorkflow_workflow_builder_dialog.png
• BasicRNASeqWorkflow_input_EDDS.png
• BasicRNASeqWorkflow_input_data_set.png
• BasicRNASeqWorkflow_output_journal.png
• BasicRNASeqWorkflow_workflow_builder.png
• BasicTilingWorkflow_input_EDDS.png
• BasicTilingWorkflow_input_data_set.png
• BasicTilingWorkflow_output_journal.png
• BasicTilingWorkflow_workflow_builder.png
• Basic_Copy_Number_Workflow.png
• Basic_Exon_Alternative_Splicing_Workflow.png
• Basic_Expression_Workflow.png
• Basic_Genetics_Workflow.png
• Basic_Linkage_Mapping_Workflow.png
• Basic_RNA-Seq_Workflow.png
• Basic_Tiling_Workflow.png
• Basic_miRNA_miRNA-Seq_Workflow.png
• BasicmiRNAmiRNASeqWorkflow_input_data_set.png
• BasicmiRNAmiRNASeqWorkflow_input_edds.png
• BasicmiRNAmiRNASeqWorkflow_output_journal.png
• BasicmiRNAmiRNASeqWorkflow_workflow_builder_dialog.png
• BatchNormalization_1.png
• BatchNormalization_1_2.png
• BatchNormalization_2.png
• BatchScoring_1.png
• Batch_Normalization.png
• Batch_Scoring.png
• Bin.png
• BinIntensitiesReadCounts.png
• BinIntensities_input_data.png
• BinSummaryStatistic.png
• Bin_1.png
• Bin_Intensities_or_Read_Counts.png
• Bin_input_data_set.png
• BinaryDependentVariableEventLlevel.png
• BinaryTraitVariable.png
• BinaryTraitVariables.png
• BindingDensityQC.png
• BioConductor.png
• BioconductorExpresso_input_cel_file.png
• BioconductorExpresso_input_data_files.png
• BioconductorExpresso_input_edf.png
• BivariateOWA_input_EDDS.png
• BivariateOWA_input_data_set.png
• BivariateOnewayANOVA_1.png
• BivariateOnewayANOVA_2.png
• BivariateOnewayANOVA_3.png
• BivariateOnewayANOVA_4.png
• Bivariate_One-Way_ANOVA.png
• BlockPartitionVariable.png
• Branch0.gif
• Browse_SAS_Data_Open_Data_Folders_Server_1.png
• Browse_SAS_Data_Open_Data_Folders_Server_2.png
• Browse_SAS_Data_Open_Data_Folders_Server_3.png
• Browse_for_Files_or_Folders_1.png
• BuildACombinedWideDataSet.png
• BuildConsensusLinkageMap_1.png
• BuildConsensusLinkageMap_1_2.png
• BuildConsensusLinkageMap_2.png
• BuildConsensusLinkageMap_3.png
• BuildConsensusLinkageMaps_1.png
• BuildConsensusLinkageMaps_2.png
• BuildConsensusLinkageMaps_3.png
• BuildConsensusMap.png
• BuildGenotypeProbabilityDataSet_1.png
• Build_Genotype_Probability_Data_Set.png
• CLCBio.png
• CLCbio_input_csv_file.png
• CN-LOH_input_EDDS.png
• CN-LOH_input_annotation_data_set.png
• CN-LOH_input_data_set.png
• CN_LOHControlSetAdjustment_1.png
• CVMC_AUC_1.png
• CVMC_overview.png
• CVPartitioningMethod.png
• CVPartitioningMethod_2.png
• CalculateSquareRootOfMatrix_1.png
• CalculateSquareRootOfMatrix_2.png
• Calculate_Square_Root_of_Matrix.png
• CallVariantsWithSAMtools.png
• CallVariantsWithSAMtools_input_reference_file.png
• Canonical_Scores_tab_DiscriminantAnalysis.png
• Case-Control_Association.png
• CaseControlAssociation1.png
• CaseControlAssociation2.png
• ChangeLabels_input.png
• ChangeLabels_output.png
• ChangeLengths_inputColumnContents.png
• ChangeLengths_outputColumnContents.png
• Change_Labels.png
• Change_Lengths.png
• CheckDataContents_1.png
• CheckDataContents_2.png
• CheckFileNames_1.png
• CheckFileNames_2.png
• CheckFileNames_3.png
• CheckTranslations_1.png
• CheckVariableRequirement.png
• Check_Data_Contents.png
• Check_File_Names.png
• ChooseMatingType.png
• ChooseMethodForRILSimulation.png
• ChromColorTheme_input_file.png
• ChromosomeColorTheme_1.png
• ChromosomeColorTheme_2.png
• ChromosomeLabelFromBaseInputSASDataSet.png
• Chromosome_Color_Theme.png
• ClassClusteringVariables.png
• Clear_Parameter_Defaults.png
• Clinical_Starter.png
• Close_All.png
• ClusterEffectType.png
• ClusterVariable.png
• ColumnContents_1.png
• ColumnContents_2.png
• ColumnContents_3.png
• ColumnContents_4.png
• ColumnDelimiterForGenotypeProbabilityFIles.png
• ColumnStats_1.png
• ColumnStats_2.png
• ColumnStats_3.png
• Column_Contents.png
• ColumnsOfQMatrixSumToOneInQ1Model.png
• ColumnsOfQMatrixSumToOneInQ2Model.png
• ColumnsOfQMatrixSumToOneInQ3Model.png
• CombineColumns_input_EDDS.png
• CombineColumns_input_data_set.png
• CombineColumns_output_EDDS.png
• CombineColumns_output_data_set.png
• CombineExperiments_1.png
• Combine_Columns.png
• Combine_Experiments.png
• CompareDataSets_Compare_Parameters_Data_Set.png
• CompareDataSets_input_1.png
• CompareDataSets_input_2.png
• CompareDataSets_output_annotated.png
• CompareLinkageMaps_1.png
• CompareLinkageMaps_1_2.png
• CompareLinkageMaps_2.png
• CompareLinkageMaps_3.png
• CompareQTLPlots.png
• CompareQTLPlots_1.png
• CompareQTLPlots_1_2.png
• CompareQTLPlots_2.png
• Compare_Linkage_Maps.png
• CompleteGenomics.png
• CompleteGenomics_input_folder.png
• Complete_variable_containing_names_of_marker_variables.png
• CompressOutputDataSet.png
• ComputeCovariancesIinsteadOfCcorrelations.png
• ComputeIndividualModelFits.png
• ComputeNearOptimalLowRAnkSVDForAdditiveAndDominanceMatrices.png
• ComputeReferenceScalingFactor.png
• Configure_Life_Sciences_Settings.png
• Contacting_Technical_Support.png
• ContinuousCLusteringVariables.png
• ContinuousIcon.png
• ControlSetNormalization_1.png
• Control_Set_Normalization.png
• ConvertCharacterDate_1.png
• ConvertCharacterDate_2b..png
• ConvertCharacterDate_3.png
• Copy.gif
• Copy_Number_LOH_Control_Set_Adjustment.png
• CorrPCA1.png
• CorrPCA1_2.png
• CorrPC_input_EDDS.png
• CorrPC_input_data_set.png
• CorrPC_input_filter_data_set.png
• Corr_PCA2.png
• Corr_PCA2_2.png
• Corr_PCA3.png
• Corr_PCA3_2.png
• CorrelationGroupedScatterplots_1.png
• CorrelationGroupedScatterplots_1_2.png
• CorrelationGroupedScatterplots_2.png
• CorrelationGroupedScatterplots_2_2.png
• CorrelationRadiusForClustering.png
• CorrelationRadiusForClustering_3.png
• Correlation_and_Grouped_Scatterplots.png
• Correlation_and_Principal_Variance_Component_Analysis.png
• Correlation_and_Principal_Variance_Component_Analysis_2.png
• CorrespondingKeyChromosomeNumberVariableFromMergeDS.png
• CorrespondingKeyGridVariableFromMergeDS.png
• CorrespondingKeyMarkerLabelFromMergeDS.png
• CorrespondingKeyTestingLocationVariablelFromMergeDS.png
• Create01_input.png
• Create01_output.png
• CreateAnnoAnalGroupVariable_1.png
• CreateAnnoAnalGroupVariable_2.png
• CreateArrayIndex_1.png
• CreateColumnName_1.png
• CreateReport_3.png
• CreateReport_4.png
• CreateReport_5.png
• CreateStaticReportForReview.png
• CreateStaticReportForReview_2.png
• CreateSubjectFilter.png
• CreateWebLinks_input_data_set.png
• CreateWebLinks_output_html_links.png
• Create_0-1_Columns_from_a_Class_Variable.png
• Create_0-1_Indicator_for_Selected_Rows.png
• Create_01_Columns_from_a_Class_Variable_dialog.png
• Create_01_Columns_from_a_Class_Variable_output.png
• Create_Annotation_Analysis_Group_Variable.png
• Create_Array_Index.png
• Create_ColumnName.png
• Create_Design_File_from_MiniML.png
• Create_SAS_ds_htSNP.png
• Create_Web_Links.png
• Create_a_Design_Data_Set_from_an_Existing_Data_Set.png
• Create_a_New_Design_File_Template.png
• Create_subset_EDDS_excluding_selected_points.png
• CriterionForStoppingModelSelection.png
• CriterionForStoppingModelSelection_2.png
• CrossCorrelation_1.png
• CrossCorrelation_1_2.png
• CrossCorrelation_2.png
• CrossEvaluation_1.png
• CrossEvaluation_1_3.png
• CrossEvaluation_1_4.png
• CrossEvaluation_2.png
• CrossType.png
• Cross_Correlation.png
• Cross_Validation_Model_Comparison.png
• Current_Study.png
• Currently_Selected_Node.png
• Currently_Selected_Number_of_Leaves.png
• Customize_Genomics_Starter.png
• DNA_design_vars.png
• DNA_input_ds.png
• DNA_log-transformed.png
• DNA_matching_vars.png
• DS_used_for_filter.png
• D_between_marker_and_disease_locus.png
• DataFilter.png
• DataFilterAnimation.png
• DataFilterRedTriangle.png
• DataFilterVariableRedTriangle.png
• DataSetHighlightRows.gif
• DataSetRecommended.gif
• DataStandardize_1.png
• DataStandardize_1_2.png
• DataStandardize_input_data.png
• DataStandardize_input_distribution.png
• DataStepStatements.png
• DataStep_input.png
• DataStep_output.png
• Data_Filter.png
• Data_Standardize.png
• Data_Standardize_2.png
• Data_Step.png
• Date_edit.gif
• DefaultAnnotationDataSet.png
• DefaultEDDS.png
• DefaultInputTallDataSet.png
• DefaultInputWideDataSet.png
• DefaultNarrativeTemplateFolder.png
• DefaultTemplateName.png
• DefineDefaultDataSets.png
• Delete.gif
• DeleteNonmatchingRows.png
• DeleteRowsNotInBaseInputDS.png
• Delete_SAS_Server_Profile.png
• DependentVariable.png
• DependentVariable_2.png
• Difference_Chooser.png
• DirectionOfEnhancedTreatmentEffect.png
• DiscriminantAnalysis_overview.png
• Discriminant_Analysis.png
• DisplayFrobeniusMeasure.png
• DisplayMarkerGenotypeCellColorPlots.png
• DisplayMarkers.png
• DisplayPre-StudyVariableRequirementsInTermsOf.png
• DistanceMatrixAndClustering_1.png
• DistanceMatrixAndClustering_1_2.png
• DistanceScoring_overview.png
• Distance_Matrix_and_Clustering.png
• Distance_Scoring.png
• DistributionAnalysis_2.png
• DistributionAnalysis_input_EDDS.png
• DistributionAnalysis_input_EDDS_drosophag.png
• DistributionAnalysis_input_EDDS_drosophag_2.png
• DistributionAnalysis_input_data_set_drosophag.png
• DistributionAnalysis_input_data_set_drosophag_2.png
• DistributionAnalysis_overview_drosophag.png
• DistributionAnalysis_overview_drosophag_2.png
• Distribution_2.png
• Distribution_Analysis.png
• Distribution_Analysis_2.png
• Distribution_AnovaNormalization.png
• Distribution_ControlSetNormalization.png
• Distribution_FactorAnalysisNormalization.png
• Distribution_LoessNormalization.png
• Distribution_MixedModelNormalization.png
• Distribution_PartialLeastSquaresNormalization.png
• Distribution_Quantile.png
• Distribution_RawData.png
• DomainViewer_SplitTransposedDataTable.png
• DoubleHelix.gif
• DownloadNetAffxFiles_1.png
• DownloadNetAffxFiles_1_2.png
• DownloadNetAffxFiles_2.png
• DownloadNetAffxFiles_2_2.png
• EDDSBuilder_1.png
• EDDS_DNA.png
• EDDS_RNA.png
• EDFBuilder.png
• Edit.gif
• EigenCorr_mult_test_method.png
• Eland.png
• EnableAccessToSASDrugDevelopmentStudyData.png
• EstimateBuilder_+_button.jpg
• EstimateBuilder_-_button.jpg
• Estimate_Builder_Compare_Means.png
• EstimatedFrequencyCutoffForCombiningRareHaplotypes.png
• ExpandMultialleicGenotypes_1.png
• ExpandMultialleicGenotypes_2a.png
• ExpandMultialleicGenotypes_2b.png
• Expand_Multiallelic_Genotypes.png
• Expand_Multiallelic_Genotypes_input_data_set.png
• Export.png
• ExportAffyCHPFiles_input_data_set.jpg
• ExportAffyCHPFiles_input_edds.jpg
• ExportAffyCHPFiles_output_sas_message.jpg
• ExportGSEAFormat_1.png
• ExportGSEAFormat_2.png
• ExportGSEAFormat_3.png
• ExportSASTransport_Results.png
• ExportToGSEAFormat_input_EDDS.png
• ExportToGSEAFormat_input_data_set.png
• ExportToPDF.gif
• Export_DataExportMessage.png
• Export_SAS_Transport_File.png
• ExpressionQCWorkflow_input_EDDS.png
• ExpressionQCWorkflow_input_data_set.png
• ExpressionQCWorkflow_output_journal.png
• ExpressionQCWorkflow_output_workflow_builder.png
• ExpressionStatisticsWorkflow_input_EDDS.png
• ExpressionStatisticsWorkflow_input_annotation_data_set.png
• ExpressionStatisticsWorkflow_input_data_set.png
• ExpressionStatisticsWorkflow_output_journal.png
• ExpressionStatisticsWorkflow_workflow_builder.png
• Expression_QC_Workflow.png
• Expression_Statistics_Workflow.png
• FactorAnalysisNormalization.png
• Factor_Analysis_Normalization.png
• FeatureFlagger_1.png
• FeatureFlagger_3.png
• Feature_Flagger.png
• Filter.gif
• FilterClear.gif
• FilterForBLUPCoefficients.png
• FilterForPLSCoefficients.png
• FilterIntensities_1.png
• FilterToIncludeLinkageGroups.png
• FilterToIncludeMarkers.png
• FilterWideColumnsBasedOnTallRows_explanation_output_wide.png
• FilterWideColumnsBasedOnTallRows_input_tall_data_set.png
• FilterWideColumnsBasedOnTallRows_input_wide_data_set.png
• FilterWideColumnsBasedOnTallRows_output_tall_data_set.png
• FilterWideColumnsBasedOnTallRows_output_wide_data_set.png
• Filter_Intensities.png
• Filter_Wide_Columns_Based_on_Tall_Rows.png
• FitIncidenceDensityModel.png
• FixedMainEffects.png
• FlipStrand_1.png
• FlipStrand_1_2.png
• Flip_Strand.png
• FolderContainingRCCFiles.png
• FolderContainingScoreCodeFIles.png
• FolderForUTF-8FilesAfterConverting.png
• FolderOfLinkageMapFiles.png
• FolderOfNon-UTF-8Files.png
• FolderOfSettingsFiles.png
• ForceAllMArkersIntoLinkageGroups.png
• GEO_directory.png
• GO_ID.png
• GWASMetaAnalysis_1.png
• GWASMetaAnalysis_1_2.png
• GWASMetaAnalysis_2.png
• GWASMetaAnalysis_2_2.png
• GWASMetaAnalysis_3.png
• GWASMetaAnalysis_4.png
• GWASMetaAnalysis_5.png
• GWASMetaAnalysis_6.png
• GWASMetaAnalysis_6_2.png
• GWAS_Meta-Analysis.png
• GeneLengthDataSet.png
• GeneModelSummary_Input_Gene_Model_Text_File.png
• GeneModelSummary_Input_SAS_Data_Set.png
• GeneSetEnrichment_1.png
• GeneSetEnrichment_1_2.png
• GeneSetEnrichment_input_data_set.png
• GeneSetScoring_1.png
• GeneSetScoring_2.png
• GeneSetScoring_input_EDDS.png
• GeneSetScoring_input_annotation_data_set.png
• GeneSetScoring_input_data_set.png
• Gene_Model_Summary.png
• Gene_Set_Enrichment.png
• Gene_Set_Enrichment_2.png
• Gene_Set_Scoring.png
• GeneralLinearModelSelection_overview.png
• General_Linear_Model_Selection.png
• GeneratHTMLOutput.png
• Generate_Genomics_Dialogs_from_XML.png
• GeneticsQKWorkflow_anno_data_set.png
• GeneticsQKWorkflow_input_data_set.png
• GeneticsQKWorkflow_output_journal.png
• GeneticsQKWorkflow_output_workflow_builder.png
• GeneticsRareVariantsWorkflow_input_annotation_data_set.png
• GeneticsRareVariantsWorkflow_input_data_set.png
• GeneticsRareVariantsWorkflow_output_journal.png
• GeneticsRareVariantsWorkflow_output_workflow_builder_dialog.png
• Genetics_Q-K_Analysis_Workflow.png
• Genetics_Rare_Variants_Workflow.png
• GenomicBlup_1.png
• GenomicBlup_1_2.png
• Genomics_Starter.png
• GenotypeRecodingForBreeding.png
• GenotypingErrorTheshold.png
• GettingStartedWizard_sampleDialog.png
• GettingStartedWizard_sampleInformationalWindow.png
• Getting_Started_Wizard.png
• Graph_Builder.png
• GreenCheckRedXInBoxes.gif
• GroupingLODThreshold.png
• GroupingVariable.png
• GxEInteraction_1.png
• GxEInteractions_1.png
• GxEInteractions_2.png
• GxEInteractions_3.png
• GxEInteractions_4.png
• GxEInteractions_5.png
• GxEInteractions_6.png
• GxEInteractions_7.png
• GxE_Interaction.png
• GxE_interaction_input_ds.png
• GxE_interaction_output_1a.png
• HG_U95A_trim_annot_csv.png
• HIdeUnchosenDialogOptionsFromRequirementsReport.png
• HapMap.png
• HapMap_input_data_set_txt.png
• HaplotypeEstimation1.png
• HaplotypeEstimation1_2.png
• HaplotypeEstimation2.png
• HaplotypeQKMixedModel_1.png
• HaplotypeQKMixedModel_1_2.png
• HaplotypeQKMixedModel_2.png
• HaplotypeQKMixedModel_3.png
• HaplotypeQKMixedModel_4.png
• HaplotypeQKMixedModel_5.png
• HaplotypeTrendRegression_1.png
• HaplotypeTrendRegression_2.png
• HaplotypeTrendRegression_3.png
• HaplotypeTrendRegression_4.png
• Haplotype_Estimation.png
• Haplotype_Trend_Regression.png
• Haseman-ElstonRegression_1.png
• Haseman-Elston_Regression.png
• HazardRatioEventPlot.png
• Help.gif
• HeterogeneousVarianceComponents.png
• HideReportsWithUnsatisfiedStudyRequirements.png
• HideUnsatisfyingStudiesFromReportDialogs.png
• Hierarchical_Clustering.png
• Hierarchical_Clustering_3.png
• Hierarchical_Clustering_data_filter_use.png
• Hierarchical_Clustering_overview.png
• Hierarchical_Clustering_row_dendrogram_crosshairs_tool_use.png
• Hierarchical_Clustering_row_dendrogram_magnifier_tool_use.png
• Hyb_protocol.png
• IBSSharingRegions_1.png
• IBSSharingRegions_1_2.png
• IBSSharingRegions_2.png
• IBSSharingRegions_3.png
• IBS_Sharing_Regions.png
• ID_by_Descent_threhold.png
• ID_by_State_threshold.png
• IM_and_CIM_Analysis.png
• IM_and_CIM_Analysis_Single_QTL_Model.png
• IPAUpload_1.png
• IPAUpload_input_data_set.png
• IlluminaCN.png
• IlluminaExpression.png
• IlluminaExpression_input_sample.png
• IlluminaExpression_input_sample_gene_profile.png
• IlluminaMethylGenoIDATInputEngine.png
• IlluminaMethylGenoIDATInputEngine_1.png
• IlluminaSNP.png
• IlluminamiRNA.png
• IlluminamiRNA_input_data.png
• ImagingQC.png
• ImpDesignedExpt.png
• ImpIndTxtCsvExcFile.png
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• ImportDesignedExpt_input_EDDS.png
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• ImportTextCSVExcel_input.png
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• Import_SAS_Transport_Files.png
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• IncludeFrameworkMarkersInTheK-MeansClusteringAnalysis.png
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• JMP_Genomics_Webcasts_Page.png
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• JSL_pt1_dist.png
• JournalBuilder_WorkflowToJournal.png
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• NumberOfRepresentativeMarkers.png
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• NumberOfSelfingGenerations.png
• NumberOfShuffles.png
• NumberOfSimulatedProgenyForEachCross.png
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• OutputR-SquareFromLogRegrBimaryNominalOrdinalTraits.png
• OutputResidualsFromEveryModelFromGlobalTest.png
• OutputSASDataSetBetwWithinFamCompVarsO-QTDT.png
• OutputSASDataSetForGenomicBlupProcess.png
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• quantile_level_for_quantile_regression.png
• quantitative_variables.png
• r-square_threshold.png
• radiobuttons_example.png
• random_effects.png
• random_number_seed.png
• random_number_seed_2.png
• random_number_seed_3.png
• random_number_seed_for_forest.png
• random_number_seed_test_f_stats.png
• random_statement_options.png
• randomly_split_data.png
• range_of_markers_var.png
• rare_variant_recoding.png
• ratio_output_ds.png
• raw_data_files_var.png
• recode_geno_anno_ds.png
• recode_geno_input_ds.png
• recode_missing_geno_input_ds.png
• recoded_genotype_column_prefix.png
• recomb_fractio_cutoff.png
• recomb_rate_vars.png
• red_triangle.png
• ref_val_applied_as_baseline.png
• reference_population_for_FST.png
• reference_time_for_comparing_survival_curves.png
• refn_anno_ds.png
• refn_anno_label_var.png
• refn_anno_major_allele.png
• refn_anno_minor_allele.png
• refn_trait_value.png
• refresh_button.png
• refresh_button_2.png
• refseq_ID.png
• refseq_db_link.png
• regard_missing_values_as_valid.png
• relation_matrix_input_ds.png
• relationship_matrix_to_compute.png
• relative_risk_AA_to_aa.png
• relative_risk_AB_to_aa.png
• reliability_diagram_example.png
• reliability_diagram_guide.png
• remove_button.png
• remove_button_7.png
• remove_dupl_cols.png
• reorder_variables.png
• repeats.png
• replace_cluster_means.png
• replace_highest_values.png
• replace_intensity_above_col_percent.png
• replace_intensity_above_stnd_dev.png
• replace_intensity_above_value.png
• replace_intensity_below_col_percent.png
• replace_intensity_below_stnd_dev.png
• replace_intensity_below_value.png
• replace_lowest_values.png
• replace_val_counts_with_propor_counts.png
• replicate_var.png
• report_SNP_interaction_only.png
• repository_name.png
• rescale_data.png
• resid_false_pos_rate.png
• response_filter_expression.png
• response_var_axis_label.png
• result_ds.png
• reverse_color_theme.png
• right-arrow.png
• right_arrow.gif
• right_arrow.png
• right_arrow_12.png
• right_arrow_17.png
• right_arrow_2.png
• right_arrow_316.png
• right_arrow_358.png
• right_arrow_376.png
• right_arrow_48.png
• right_arrow_565.png
• right_arrow_577.png
• right_arrow_616.png
• right_arrow_715.png
• right_arrow_75.png
• right_arrow_80.png
• rna_output_ds.png
• row-level_class_vars.png
• row_index_var.png
• rpm_scaling_input_data_set.png
• rpm_scaling_input_edds.png
• rule_mix_max_number_initial_rules.png
• rule_mix_max_number_secondary_rules.png
• run_script_button.png
• sample_description.png
• sample_file.png
• sample_name_var.png
• sample_proportion_of_cases.png
• sample_size.png
• sample_size_var.png
• sample_sizes.png
• sas_code_1_dist.png
• sas_code_2_dist.png
• sas_code_3_dist.png
• sas_code_4_dist.png
• sas_data_sets.png
• sas_ds.png
• sas_message_window.png
• sasvarlist_example.png
• saving_script_to_data_table.png
• scale_columns.png
• scale_rows.png
• scale_rows_2.png
• scaling_approach.png
• scan_protocol.png
• scatterplot_matrix.png
• scree_plot.png
• scree_plot_2.png
• scree_plot_relationship_matrix.png
• script_on_data_table.png
• script_on_data_table_run_script.png
• search_method.png
• sec_anno_chromo_var.png
• sec_anno_label_var.png
• sec_anno_merge_vars.png
• sec_anno_pos_var.png
• second_EDDS.png
• second_tall_ds.png
• secondary_anno_ds.png
• secondary_delimiter.png
• secondary_input_ds.png
• secondary_output_ds.png
• seebttm.gif
• seelflow.gif
• seeright.gif
• seertlow.gif
• seertup.gif
• segmentation_summary_plot.png
• select_key_var_to_merge.png
• select_markers_in_graphs_or_linked_tables_then_click_to_view_survival_curves.png
• select_training_based_on_missing_data.png
• selection_tool.png
• sep_jour_results_by_chrom.png
• sep_results_based_on_des-lev_by_vars.png
• separate_model_bar_charts.png
• separate_test_set_bar_charts.png
• series_title.png
• series_vars.png
• server_ID.png
• server_name.png
• server_name_2.png
• server_type.png
• servers.31.12.1.png
• set_flag_data_to_missing.png
• set_ind_genotypes_to_missing_that_are_below.png
• set_neg_values_to_missing.png
• sex_variable.png
• shared_grid_folder.png
• shift_plot_1.png
• shifting_factor.png
• show_domain_keys_button_result.png
• show_events_button_result.png
• shrink_variances.png
• sign_level_for_adding_variables.png
• sign_level_for_retaining_variables.png
• signif_level_entry.png
• signif_level_retain.png
• similarity_measure.png
• similarity_measure_2.png
• single_marker_anal_anno_ds.png
• single_marker_anal_input_ds.png
• size_error_bars.png
• slider_example.png
• sliding_window_size.png
• sliding_window_var.png
• smoothing_bandwidth_mult.png
• smoothing_parm.png
• snp_ds.png
• snp_id_variable.png
• snp_id_variable_2.png
• snp_id_variable_3.png
• snp_interact_discovery_input_ds.png
• snp_variables.png
• snp_variables_numeric_genotypes.png
• snp_variables_to_retain.png
• snp_vars_coded_numeric.png
• sort_VCA_plots_by_Weighted_ave_propor_variation.png
• source_name_var.png
• spec_regular_param.png
• split_by_vars.png
• spm_input_ds.png
• spm_survival_curves.png
• standard_stats_input_ds.png
• standardization_meth_predict_contin_variables.png
• standardization_method.png
• standardization_method_2.png
• standardize.png
• standardize_KDMM_factor.png
• standardize_TMM_factor.png
• standardize_variables_before_clustering.png
• standardized_residual_plot_1.png
• standardized_residual_plot_2.png
• start.png
• starting_value_for_E.png
• starting_value_for_L.png
• starting_value_for_M.png
• stat_test_method_for_reducing_contin_predictors.png
• stat_to_impute.png
• std_err_var.png
• stepwise_em_cutoff.png
• stnd_error_estimate.png
• stnd_error_variable.png
• stnd_residuals_output_ds.png
• stndize_batch_profile.png
• strata_bubble_plot.png
• strata_variable.png
• strata_variables.png
• study.png
• study_10.png
• study_11.png
• study_12.png
• study_13.png
• study_2.png
• study_3.png
• study_4.png
• study_5.png
• study_6.png
• study_7.png
• study_8.png
• study_ID_var.png
• study_name.png
• sub-feature_variable.png
• subj_var.png
• subset_ds_for_stnd.png
• subset_reorder_gen_data_anno_ds.png
• subset_reorder_gen_data_input_ds.png
• subset_size.png
• summary.png
• summary_level.png
• summary_stat.png
• summary_stat_across_continuous_vars.png
• support.png
• suppress_graphics_and_html.png
• surface_plot.png
• survey_snp_trait_input_ds.png
• survival_curves.png
• survival_plot.png
• svd_prefix.png
• swiss-prot_link.png
• swiss_prot_ID.png
• tau_value.png
• tau_value_2.png
• technology.png
• test_allelic_assn.png
• test_button.png
• test_button_2.png
• test_each_marker_individually.png
• test_indiv_haplotypes.png
• test_statistic.png
• test_window_size.png
• tests.png
• third_edds.png
• third_tall_ds.png
• threshold.png
• time_trend_plot.png
• title_var.png
• top.gif
• total_option.png
• trace_plot_or_time_series_graph.png
• track_setting_files.png
• trait_variable.png
• trait_variables.png
• transformation_of_input_p-values.png
• transformation_of_input_p-values_2.png
• transformation_of_output_p-values.png
• transformation_of_output_p-values1.png
• transformation_of_output_p-values_2.png
• transpose_data_for_cell_plot.png
• treat_missing_genotypes_as.png
• treatment_protocol.png
• tree_map.png
• trellis_plot.png
• triangle.png
• tte_var.png
• two_way_clustering.png
• type_1_error_rate.png
• type_of_coefficients_to_calculate.png
• type_of_correlation.png
• type_of_correlation_2.png
• type_of_data.png
• type_of_dependent_variable.png
• type_of_dependent_variable_2.png
• type_of_expression_data.png
• type_of_kernel.png
• type_of_model.png
• type_of_other_files.png
• type_of_tests_to_perform.png
• type_of_trait.png
• type_of_weight.png
• unbound_variance_comp_est.png
• uniformly_scale_histograms.png
• uniformly_scale_y-axis.png
• uniformly_scale_y-axis1.png
• unigene_ID.png
• unigene_link.png
• up_button.png
• up_button_7.png
• upper_number_of_dimensions_to_fit.png
• upper_quartile_scaling_input_data_set.png
• upper_quartile_scaling_input_edds.png
• usage_of_k-means_clusters.png
• use_anno_label_var_for_var_prefixes.png
• use_automated_hierarchical_clustering.png
• use_bias_correct_recomb_formula.png
• use_dom_coding_trend_test.png
• use_forest_to_create_interaction_indicators.png
• use_forest_to_create_interaction_indicators_2.png
• use_forest_to_filter_predictors.png
• use_grid_computing.png
• use_grid_computing_2.png
• use_k-means_clustering_to_reduce_predictors.png
• use_leave-one-out_error_rate_as_fitness_function.png
• use_monte_carlo_kbac.png
• use_old_qtl_data_format.png
• use_old_qtl_data_format_2.png
• use_pooled_est_variance.png
• use_rank-based_stat.png
• use_reported_sex_value_when_ambiguous.png
• use_simple_cox_proportional_hazards_function.png
• use_stat_testing_to_reduce_predictors.png
• use_threshold_for_incl_variants.png
• user_ID.png
• user_name.png
• val_ID_var_to_plot.png
• val_assoc_nonautosomes.png
• val_censor_val_for_censoring.png
• val_col_assoc_with_ctrl.png
• val_defn.png
• val_replace_highest_vals.png
• val_replace_lowest_vals.png
• value_ordering_nom_color_var.png
• value_ordering_nom_color_var_2.png
• value_ordering_nom_vars.png
• value_repres_cases.png
• value_to_be_used_as_denominator.png
• var_containing_Loess_names.png
• var_defining_ratio.png
• variable_containing_names_of_marker_variables.png
• variable_selection_method.png
• variable_selection_method2.png
• variable_to_define_tree_axis.png
• variables.png
• variables_by_which_to_merge.png
• variables_by_which_to_merge_2.png
• variables_by_which_to_merge_3.png
• variables_to_be_standardized.png
• variables_to_be_standardized_2.png
• variables_to_drop.png
• variables_to_keep_in_output.png
• variance_component_effects.png
• vars_by_which_merge_anno_data.png
• vars_by_which_to_merge_filter_ds.png
• vars_define_anal_groups.png
• vars_define_blocks.png
• vars_define_control_sets.png
• vars_define_groups.png
• vars_define_groups_mean_processing.png
• vars_define_oneway_class.png
• vars_define_tall_col_names.png
• vars_define_wide_col_names.png
• vars_defining_groups.png
• vars_retain_link_map_ds.png
• vars_retain_link_map_ds_2.png
• vars_to_be_normalized.png
• vars_to_display_distributions.png
• vars_to_impute.png
• vars_to_keep.png
• vars_to_keep_in_PCA_ds.png
• vars_to_keep_or_merge.png
• vars_to_plot.png
• verify_gender_anno_ds.png
• verify_gender_input_ds.png
• view_button.png
• view_domain_button_result.png
• view_offspring_genotypes_input_output.png
• view_plot_of_input_data_for_the_selected_interactions.png
• view_venn_diagram_of_significant_markers_by_trait_for_the_test_below.png
• volcano_plot_1.png
• volcano_plot_3.png
• volcano_plot_3a.png
• weblink.png
• weight_MDS_fit_recomb_fracts.png
• weight_variable.png
• weight_with_kern_density.png
• weighting_method_sibships.png
• where_clause_for_subsetting_data_test_run.png
• where_clause_for_subsetting_data_test_run_2.png
• width_of_positional_group.png
• window_overlap.png
• window_size_unit.png
• winsor_rate.png
• with_variables.png
• within_sub-feature_median.png
• workflow_output_name.png
• x-axis_filter_cutoff.png
• x-axis_filter_cutoff_2.png
• x-coordinate_var.png
• x-linked_marker_clause.png
• x-linked_markers_clause.png
• xml_1st_description.png
• xml_AP_name.png
• xml_code.png
• xml_tabbed_pane.png
• y-coordinate_var.png
• z-coordinate_var.png
• zoom_tool.png