Annotation File

Specify the full path and filename of the annotation file to use for summarization. This file could be a .BED or .TXT file (and could be downloaded from the UCSC Genome Browser).

For detailed information about the files and data sets used or created by JMP Life Sciences software, see Files and Data Sets.

To Specify an Annotation File:

Select “Exon” or “Gene(s)” as the Summarization Method under the Summary tab.

The Annotation File field becomes active.

The method used for this specification can vary depending on whether JMP is connected to SAS on your local machine or connected to SAS on a server. You should refer to the Specifying Folders, Files, and Data Sets documentation for detailed information.

To View the Contents of the Specified File:

Click Open.

An example of an annotation file is shown below: