Measures to Include (CopyNumber Data)

Select columns to include in the Output Data Set.

Choices include:

Measure	Description
Log2Ratio	Log2 ratio (signal / median of reference signal)
WeightedLog2Ratio	Running median of log2 ratios for n markers (default: n=5)
SmoothSignal	Each value is the result of a kernel smoothed over a window of genomically contiguous log2 ratios. By default, this is converted to a copy number value using a log-linear model that fits each CN state to its expected log2 ratio. This is useful for seeing mosaics.

For more information about these measures, refer to Affymetrix documentation.

For detailed information about the files and data sets used or created by JMP Life Sciences software, see Files and Data Sets.

To Select Measures to Include for Copy Number Data:

Left-click a single measure, or hold down Ctrl while left-clicking to select multiple measures.