The Track SNP Web process creates a settings (.sas) file that defines a display track for a set of SNPs to be added to JMP Genomics statistical results (for example, you can include plots of -log10(p-values) along chromosomes). The resulting settings file can then be selected as a track file for embellishing graphics with depictions of SNPs.
For detailed information about the files and data sets used or created by JMP Life Sciences software, see Files and Data Sets.
Running the Track SNP Web process results in the generation of the settings file (for example, TrackSNPWeb__UCSC_hg18_snpArrayAffy250Sty.sas), whose path is displayed in the JMP Genomics Message window.
