Bin Intensities or Read Counts

This utility bins intensities or read counts stored in rows in a tall SAS data set using chromosome and position information, reducing the number of rows in a large data set in preparation for downstream plotting and modeling. Bin size can be set to include a specified number of positions, or to include all rows within a positional window on a chromosome.

What do I need?

One tall SAS data set containing intensity or read count information.

Note: To bin by chromosome and position, these variables must be included in the input data set.

The xtitration_bin.sas7bdat data set serves as an example.

For detailed information about the files and data sets used or created by JMP Life Sciences software, see Files and Data Sets.

Output/Results

The output data sets generated by this process are listed in a Results window. Refer to the Bin Intensities or Read Counts output documentation for detailed descriptions.