Click on a button corresponding to a genome browser process. These processes are summarized below.
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Adjusting columns of p-values for multiple testing or plotting adjusted and optionally transformed p-values using chromosomal positions. Results can be journaled by a group such as chromosome or candidate gene. The output data set also contains variables indicating significance and number of consecutive significant p-values according to the specified alpha level. A graphic representation of the gene can be overlaid onto the p-value plot for exploring the significance and potential mechanism of differential expression.
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Creating a settings (.sas) file from a text file that defines a Chromosome Color Theme. This file can be used for displaying the Chromosome Color Plot in the JMP Genomics Browser process.
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Creating an .html table with links to the UCSC Genome Browser based on locations, gene names, or other parameters. This process enables you to create a custom track for upload to the UCSC Genome Browser by specifying a quantitative variable of interest from an analysis performed in JMP Genomics.
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See Genome Views for other subcategories.