Illumina

Click a button for importing Illumina data into SAS data sets.

Process	Required Input	Possible Output
Illumina Expression Input Engine	Folder containing an Illumina data file, of one of the following types: • Exported • Final Report	Output data set Output EDDS Output annotation data set
Illumina miRNA Input Engine	Folder containing an Illumina data file, of one of the following types: • Exported • Final Report	Output data set Output EDDS Output annotation data set
Illumina SNP Input Engine	Folder of raw files, of one of the following types: • Full Data Table • Final Report • JMP G Custom Report	Output genotype data set Output map data set
Illumina Copy Number Input Engine	Folder of raw files, of one of the following types: • Full Data Table • Final Report • JMP G Custom Report	Output data set Output EDDS Output allele intensity data set Output allele intensity EDDS
Illumina Methylation/Genotype IDAT Input Engine	A folder containing: • the IDAT files • an Experimental Design File (EDF) that indexes the IDAT files	Output data set Output EDDS Output SD data set Output NBeads data set

There are also two processes for converting text, CSV, or Excel data files into SAS data files:

Process	Choose this process for creating a SAS data set from...
Import Individual Text, CSV, or Excel Files	Raw data
Import a Designed Experiment from Text, CSV, or Excel Files	Designed experiments

See Import for other subcategories.