Example of Multivariate Embedding

Use the UMAP method to reduce high-dimensional data to two dimensions.

1. Select Help > Sample Data Folder and open Cytometry.jmp.

2. Select Analyze > Multivariate Methods > Multivariate Embedding.

3. Select CD3 through MCB and click Y, Columns.

4. Confirm that the Method is set to UMAP.

5. (Optional.) Type 1234 next to Random Seed.

Note: Entering the seed above enable you to reproduce the results shown in this example.

6. Click OK.

7. Click the gray triangle next to Iteration History.

Figure 11.2 Multivariate Embedding Report 

The Multivariate Embedding report window contains a plot of the two dimensions computed using the UMAP method and specified parameter settings for the computational algorithm.

Want more information? Have questions? Get answers in the JMP User Community (community.jmp.com).