The Hardy-Weinberg Equilibrium plot shows how close each of the markers are to equilibrium. The column number of each marker in the JMP table is plotted on the x-axis. The Logworth-adjusted p-value and -log10 (p-value) for HWE for each marker is plotted on the y-axis. Markers at or below the reference line are at equilibrium, markers above the line are not. The farther from the reference a marker is, the further the marker is from equilibrium.