The following sources are referenced in the Genetics book.
Batista, L.G., Mello, V.H, et al. (2022). Genomic prediction with allele dosage information in highly polyploid species. Theor. Appl. Gen. 135(2):723-739.
Botstein, D., White, R. L., Skolnick, M., and Davis, R. W. (1980). Construction of a Genetic Linkage Map in Man Using Restriction Fragment Length Polymorphisms. American Journal of Human Genetics 32:314–331.
Endelman, J.B. and Jannink, J.-L. (2012). Shrinkage Estimation of the Realized Relationship Matrix. G3: 2. doi: 10.1534/g3.112.004259Hildebrand, C. E., Torney, D. C., and Wagner, R. P. (1992). Informativeness of Polymorphic DNA Markers.Los Alamos Science 20:100–102.
Piepho, H. P. (2009). Ridge regression and extensions for genomewide selection in maize. Crop Sci. 49: 1165–1176.
Su, G., Christensen, O.F.,Tage Ostersen, Henryon, M., and Lund, M.L. (2012). Estimating Additive and Non-Additive Genetic Variances and Predicting Genetic Merits Using Genome-Wide Dense Single Nucleotide Polymorphism Markers. PlosONE 7(9): e45293. doi:10.1371/journal.pone.0045293
Wang, J., Zhou, Z., Zhang, Z. et al. (2018). Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits. Heredity 121, 648–662. https://doi.org/10.1038/s41437-018-0075-0
Weir, B. S. (1979). Inferences about Linkage Disequilibrium. Biometrics 35:235–254.
Weir, B. S. (1996). Genetic Data Analysis II. Sunderland, MA: Sinauer Associates.
VanRaden, P.M. (2008). Efficient Methods to Compute Genomic Predictions. J.Dairy Sci. 91:4414-4423.
Yu, J., Pressoir, G., Briggs, W. et al. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38, 203–208 (2006). https://doi.org/10.1038/ng1702
Zaykin, D. (2004). Bounds and Normalization of the Composite Linkage Disequilibrium Coefficient. Genetic Epidemiology 27:252–257.
Zulma G. Vitezica, L.V., and Legarra, A. (2013). On the Additive and Dominant Variance and Covariance of Individuals Within the Genomic Selection Scope. Genetics, 195:1223-1230.