Output Description

Standardize Genotypes

Running this process for the GeneticMarkerExample sample setting generates one output data set accessed from a Results window shown below. Refer to the Standardize Genotypes process description for more information about this process.

The Results window contains the following panes:

Output Data

This process generates the following output data set:

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Output Standardized Data Set: The output data set (shown below) contains the standardized genotype data from the input data set. Genotypes were standardized by subtracting the genotype (column) mean from the genotype of each individual (row) in the data set and dividing the resulting value by the genotype standard error for that marker. Columns are identified by the SAS label.

The columns shaded in red contain the standardized genotype values.

Note: Because genotypes are numerically identified by either 0, 1, or 2, there are only three possible values in each column.

For detailed information about the files and data sets used or created by JMP Genomics software, see Files and Data Sets.

General

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Click Reopen Dialog to reopen the completed process dialog used to generate this output.

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Click Close All to close all graphics windows and underlying data sets associated with the output.