Output Description

PLINK Input Engine

Running this process using the test.ped and test.map files generates the Results window shown below. Refer to the PLINK Input Engine process description for more information.

The Results window contains the following elements:

Output Data

This process generates the following data sets:

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Genotype Data Set: This wide data set lists genotype for each marker. Alternatively, for markers for which no genotype's probability meets the specified threshold, a missing value symbol (.) is listed.

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Map Data Set: This data set lists map data and other information for each of the SNPs in the study. Note: The SNPs are listed in rows in this data set.

Note: You can view the data in a file or data set by clicking either Open or View Subset (when the data set is very large).

Launch Follow-up Processes

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Basic Genetics Workflow: Click Basic Genetics Workflow to launch the Basic Genetics Workflow process with the output data sets specified as input.

General

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Click Reopen Dialog to reopen the completed process dialog used to generate this output.

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Click Close All to close all graphics windows and underlying data sets associated with the output.