All P-Value Plots (Pleiotropic Association)

A portion of the All P-Value Plots tab is shown below:

Note: This tab is named P-Value Plot when either when no Annotation Group Variable is specified or when there is only one annotation group.

This tab displays the p-value overlay plots from all the annotation groups in a single display. P-values (raw or transformed) are plotted on the y-axis and location is plotted on the x-axis. The horizontal red-dotted line represents the specified significance level.

A separate plot is created for each annotation group and for each trait and the overall MANOVA test. If any BY variables were selected, a separate chart is displayed for each BY group as well.

If no annotation group variable is used or there is only one annotation group, this plot displays a single p-value plot (or multiple plots if any By Variables are selected) from the analysis.