Annotation Group Results (Missing Genotypes by Trait Summary)

The Annotation Group Results tab is shown below:

The Annotation Group Results tab contains the following elements:

•

One or more P-Value Plots.

The y-axis variable is the p-value from the missing genotype by trait test, converted to the -log or -log10 scale if selected in the process dialog. The x-axis plots location of the marker according to the annotation location variable within the annotation group.

A horizontal reference line is drawn as a red, dashed line at the significance level that was specified. For -log or -log10-converted p-values, markers above this line are significant; for p-values on the original scale, markers below the line are significant.

If any BY variables were selected, a separate chart is displayed for each BY group.

•

One or more count of missing genotype overlay plot.

For each value of the Trait Variable, the number of missing genotypes is plotted on the y-axis, and the x-axis plots location of the marker according to the annotation location variable within the annotation group (like the plot above).

If any By Variables were selected, a separate chart is displayed for each BY group.

•

One or more count of missing genotype distribution charts.

For each value of the Trait Variable, the number of missing genotypes is displayed in a frequency chart. If any By Variables were selected, a separate set of charts is displayed for each BY group.

The action buttons can be used on markers selected from these tabs as described for the Manhattan Plots.