Annotation Group Results (Pleiotropic Association)

A portion of the Annotation Group Results tab is shown below:

The Annotation Group Results tab contains the following elements:

•

A set of P-Value Plots.

When there are multiple annotation groups, there is a separate Annotation Group Results tab for each annotation group. In this example there are two annotation groups, CandGene 1 and CandGene 2. The CandGene 1 Results tab is shown above.

The y-axis variable is the p-value from the association tests, converted to the -log or -log10 scale if selected in the process dialog. The x-axis plots location of the marker according to the annotation location variable within the annotation group. A horizontal reference line is drawn as a red, dashed line at the significance level that was specified. For -log- or -log10-converted p-values, markers above this line are significant; for p-values on the original scale, markers below the line are significant.

All tests are included in a single plot with a legend displaying the line and point color and marker for each test. A separate plot is created for each trait and for the overall MANOVA test.

If any BY variables were selected, a separate plot is displayed for each BY group.