Framework Order Variable

Indicate a framework order variable containing values for certain markers in the Input Genotype SAS Data Set for which you want to fix the order for according to the order of the values of this variable within linkage groups. This variable is used by the Linkage Map Order process to find the optimal marker order while honoring the constraints of the order of framework markers.

Important: When specifying a Framework Map in the Recombination and Linkage Groups process, this variable (while it is not used in the Linkage Group process) should be specified to ensure that it is included in the output data set to be used for marker ordering and specified in the Linkage Map Order dialog.

To Specify the Framework Order Variable:

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Specify a Framework Map Data Set.

All of the variables in the specified data set are displayed in the Available Variables field.

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Examine the list of available variables.

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Highlight the desired variable.

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Click to add the highlighted variable to the Framework Order Variable field.