Process Description

Track SNP Web

The Track SNP Web process creates a settings (.sas) file that defines a display track for a set of SNPs to be added to JMP Genomics statistical results (for example, you can include plots of -log10(p-values) along chromosomes). The resulting settings file can then be selected as a track file for embellishing graphics with depictions of SNPs.

What do I need?

A connection to the Internet.

For detailed information about the files and data sets used or created by JMP Genomics software, see Files and Data Sets.

Output/Results

Running the Track SNP Web process results in the generation of the settings file (for example, TrackSNPWeb__UCSC_hg18_snpArrayAffy250Sty.sas), whose path is displayed in the JMP Genomics Message window.

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Opening the file with a text editor reveals the code. An example is shown below.

This file can be used with any JMP Genomics process having a Tracks tab.