Publication date: 04/21/2023
Marker Statistics
The Marker Statistics platform provides a convenient method for exploring several properties of all the biallelic markers in a data set, for the purpose of quality control (QC) and possibly selecting markers to be removed from the analysis.
Figure 3.1 Example Analysis Using the Marker Statistics PlatformÂ
The Marker Statistics platform is available only in JMP Pro.
Contents
Overview of the Marker Statistics Platform
Example of Marker Statistics
Launch the Marker Statistics Platform
Required Data Format for the Marker Statistics Platform
The Marker Statistics Report and Options
Levels Table
Counts Table
Result Table
Hardy-Weinberg Equilibrium FDR Logworth Plot
LD Decay Plot
Additional Example of the Marker Statistics Platform
Want more information? Have questions? Get answers in the JMP User Community (community.jmp.com).