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Genetics > Marker Statistics
Publication date: 05/05/2023

Image shown hereMarker Statistics

The Marker Statistics platform provides a convenient method for exploring several properties of all the biallelic markers in a data set, for the purpose of quality control (QC) and possibly selecting markers to be removed from the analysis.

Figure 3.1 Example Analysis Using the Marker Statistics Platform 

Example Analysis Using the Marker Statistics Platform

The Marker Statistics platform is available only in JMP Pro.

Contents

Overview of the Marker Statistics Platform

Example of Marker Statistics

Launch the Marker Statistics Platform

Required Data Format for the Marker Statistics Platform

The Marker Statistics Report and Options

Levels Table
Counts Table
Result Table
Hardy-Weinberg Equilibrium FDR Logworth Plot
LD Decay Plot

Additional Example of the Marker Statistics Platform

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