Output Description

Recode Missing Genotypes

Running this process for the GeneticMarkerExample sample setting generates one output data set accessed from a Results window shown below. Refer to the Recode Missing Genotypes process description for more information about this process.

The Results window contains the following panes:

Output Data

This process generates the following output data set:

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Output Genotype Data Set: The output data set containing the genotype data from the input data set recoded as specified in the process dialog. In this example, the missing character genotypes, represented in the input data set by asterisks (*), were replaced with the blanks ( ) required by JMP Genomics genetic processes for missing character genotypes. Compare the genotypes at markers g1 and g2 for the first 10 individuals (shown below).

 

The panel on the left, which comes from the input data set, shows the genotypes for the first ten individuals at markers g1 and g2. Two alleles delineated by a “/” are present at these loci, with allele "1" being the most common. The panel on the right, which comes from the output data set, shows the same data. Missing genotypes are indicated by blank spaces.

For detailed information about the files and data sets used or created by JMP Genomics software, see Files and Data Sets.

General

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Click Reopen Dialog to reopen the completed process dialog used to generate this output.

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Click Close All to close all graphics windows and underlying data sets associated with the output.