Publication date: 07/24/2024
Marker Relatedness
The Marker Relatedness platform is used to assess different measures of genetic relatedness between pairs of individuals based on their genetic markers. The output of the platform is a genomic relationship matrix with n rows by n columns (n = number of individuals in the data table). The matrix can be used to fit GBLUP models under the Fit Model platform with the Response Screening personality. The relationship matrix can also be used to assess groups of related individuals via principal component analysis and clustering.
Figure 5.1 Example of the Marker Relatedness PlatformÂ
The Marker Relatedness platform is available only in JMP Pro.
Contents
Example of Marker Relatedness
Launch the Marker Relatedness Platform
Required Data Format for the Marker Relatedness Platform
The Marker Relatedness Report and Options
Summary of Dialog Options
Scatterplot Matrix
Principal Components Plot
Hierarchical Clustering
Another Example of the Marker Relatedness Platform
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